freqmod step clock instability


Has anyone experienced step pulse instability? 
I have been monitoring the step and dir pulses and have been seeing glitches in the step pulse stream during moves.  The period sometimes changes as much 200% during what should be constant velocity during the move. 
I am running emc on a 1G athlon with 128M of ram.  I ran a interrupt latency test for RTLinux, and it runs very consistently at around 8.4us.
 
Any ideas?


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